[Segway-announce] Segway paper available at Nature Methods web site

[Michael Hoffman]

The Segway paper is now available in Advance Online Publication in
Nature Methods: http://dx.doi.org/10.1038/nmeth.1937

Please cite this paper if you use Segway:

Hoffman MM, Buske OJ, Wang J, Weng Z, Bilmes J, Noble WS. 2012.
Unsupervised pattern discovery in human chromatin structure through
genomic segmentation. Nat Methods. In press. doi:10.1038/nmeth.1937

It is available on PubMed: http://www.ncbi.nlm.nih.gov/pubmed/22426492

BibTex citation:

@article{hoffman:unsupervised,
abstract = {We trained Segway, a dynamic Bayesian network method,
simultaneously on chromatin data from multiple experiments, including
positions of histone modifications, transcription-factor binding and
open chromatin, all derived from a human chronic myeloid leukemia cell
line. In an unsupervised fashion, we identified patterns associated
with transcription start sites, gene ends, enhancers, transcriptional
regulator CTCF-binding regions and repressed regions. Software and
genome browser tracks are at
http://noble.gs.washington.edu/proj/segway/.},
author = {Hoffman, Michael M and Buske, Orion J and Wang, Jie and
Weng, Zhiping and Bilmes, Jeff A and Noble, William Stafford},
doi = {10.1038/nmeth.1937},
journal = {Nature Methods},
keywords = {Segway,chromatin,functional genomics,segmentation},
title = {{Unsupervised pattern discovery in human chromatin structure
through genomic segmentation}},
url = {http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.1937.html},
volume = {In press},
year = {2012}
}

Please let me know if you have any questions.

Many thanks,
-- 
Michael Hoffman, PhD
Senior Fellow
Department of Genome Sciences
University of Washington
3720 15th Ave NE
Seattle, WA 98195-5065

mmh1 at uw.edu